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Publications

2022

M. Jungkunz,  A. Köngeter, M. Spitz, K. Mehlis, K. Cornelius, C. Schickhardt, EC. Winkler
ETABLIERUNG DER SEKUNDÄREN FORSCHUNGSNUTZUNG VON BEHANDLUNGSDATEN  IN DEUTSCHLAND
Ergebnisse des DFG-geförderten Verbundprojekts LinCDat: „Learning from Clinical Data. Ethical, Social and Legal Aspects“

KY. Cheng, S. Pazmino, B. Schreiweis.
ETL Processes for Integrating Healthcare Data - Tools and Architecture Patterns
Stud Health Technol Inform. 2022 Nov 3;299:151-156. doi: 10.3233/SHTI220974. PMID: 36325856

M. Anywar, B. Schreiweis, H. Ulrich
Strategies and Recommendation for Data Loading of FHIR-Based Data Marts with Focus on GDPR Compliance
Stud Health Technol Inform. 2022 Aug 31;298:127-131. doi: 10.3233/SHTI220921. PMID: 36073470.

K. Arshad, S. Ardalan, B. Schreiweis, B. Bergh
Integration of AI Platforms with Clinical IT: Process Modelling for Generic Use Cases
67. Jahrestagung Der Deutschen Gesellschaft Für Medizinische Informatik, Biometrie Und Epidemiologie e. V. (GMDS), 13. Jahreskongress Der Technologie- Und Methodenplattform Für Die Vernetzte Medizinische Forschung e.V. (TMF), 2022.

T. Bronsch, B. Bergh, B. Schreiweis.
Requirements Analysis for Core Medical Research IT Infrastructure Components: A Systematic Literature Analysis
67. Jahrestagung Der Deutschen Gesellschaft Für Medizinische Informatik, Biometrie Und Epidemiologie e. V. (GMDS), 13. Jahreskongress Der Technologie- Und Methodenplattform Für Die Vernetzte Medizinische Forschung e.V. (TMF), 2022.

B. Kinast, M.  Lutz, B. Schreiweis.
Telemonitoring of Real-World Health Data in Cardiology: A Systematic Review
67. Jahrestagung Der Deutschen Gesellschaft Für Medizinische Informatik, Biometrie Und Epidemiologie e. V. (GMDS), 13. Jahreskongress Der Technologie- Und Methodenplattform Für Die Vernetzte Medizinische Forschung e.V. (TMF), 2022.
A. Tomczak, C. Springfeld, M. T. Dill, D.-H. Chang, D. Kazdal, U. Wagner, A. Mehrabi, A. Brockschmidt, T. Luedde, P. Naumann, A. Stenzinger, P. Schirmacher & T. Longerich

Precision oncology for intrahepatic cholangiocarcinoma in clinical practice. 
British Journal of Cancer (2022)

K. Hamacher, T. Kussel, T. von Landesberger, T. Baumgartl, M. Hoehn, S. Scheithauer, M. Marschollek, A. Wulff.

Fallzahlen, Reidentifikation und der technische Datenschutz. Ein Aspekt der SARS-CoV-2 Pandemie.
Datenschutz und Datensicherheit, 46pages 143–148 (2022)

 

K. Sommer, A. Amr , U. Bavendiek, F. Beierle, P. Brunecker, H. Dathe, J. Eils, M. Ertl, G. Fette, M. Gietzelt, B. Heidecker, K. Hellenkamp, P. Heuschmann, J. D. E. Hoos, T. Kesztyüs, F. Kerwagen, A. Kindermann, D. Krefting, U. Landmesser, M. Marschollek, B. Meder, A. Merzweiler, F. Prasser, R. Pryss, J. Richter, P. Schneider, S. Störk, C. Dieterich.
Structured, Harmonized, and Interoperable Integration of Clinical Routine Data to Compute Heart Failure Risk Scores
Life, 12(5), 749 (2022)

2021

Borchert, A. Mock, A. Tomczak, J. Huegel, S. Alkarkoukly, A. Knurr, A-L. Volckmar, A. Stenzinger, P. Schirmacher, J. Debus, D. Jaeger, T. Longerich, S. Fröhlich, R. Eils, N. Bougatf, U. Sax, M-P. Schapranow

Knowledge bases and software support for variant interpretation in precision oncology
Brief Bioinform, 2021 Nov, 5;55(6).

 

Tute, I. Scheffner, M. Marschollek
A method for interoperable knowledge-based data quality assessment.
BMC Med Inform Decis Mak. 2021 Mar 9;21(1):93. doi: 10.1186/s12911-021-01458-1. PubMed PMID: 33750371; PubMed Central PMCID: PMC7942002

 

E. Tute, M. Gietzelt
A quality management concept for data management in data integration centers. Digitale Medizin. Erkennen, Verstehen, Heilen. 66. Jahrestagung der Deutschen Gesellschaft für Medizinische Informatik, Biometrie und Epidemiologie e. V. (GMDS), 12. Jahreskongress der Technologie- und Methodenplattform für die vernetzte medizinische Forschung e.V. (TMF)
2021 September 26; Kiel, Germany. c2021

 

E. Tute, N. Ganapathy, A. Wulff
A data driven learning approach for the assessment of data quality.
BMC Med Inform Decis Mak
. 2021 Nov 1;21(1):302. doi: 10.1186/s12911-021-01656-x. PubMed PMID: 34724930; PubMed Central PMCID: PMC8561935

 

S. Alkarkoukly and A.-M. Rajput
An openEHR Virtual Patient Template for Pancreatic Cancer
Stud Health Technol Inform. 285:292-295, 2021

 

A.-M. Rajput and S. Alkarkoukly

An OpenEHR Template with the Integrated German LOINC Terms

Stud Health Technol Inform. 281:1116-1117, 2021

 

A.-M. Rajput

Semi-Automated Approach to Populate any FHIR Server via POST Method

Stud Health Technol Inform. 281:1114-1115, 2021


A.-M. Rajput and I. Brakollari

Mapping of OpenEHR Archetypes to FHIR Resources in Use Case Oncology

Stud Health Technol Inform. 285:285-287, 2021

 

A.-M. Rajput, A. Gronke and W. Johannis

Semi-automated approach to validate and enrich LOINC codes by FHIR Server

304-307, 2021

 

A.-M. Rajput and C. Drenkhahn

Perspectives and Obstacles for Transforming Terminologies into FHIR CodeSystems Exemplified by Alpha-ID

Stud Health Technol Inform. 281:213-217, 2021

 

B. Schreiweis, D. Ammon, M. Sedlmayr, F. Albashiti and T. Wendt, “the data integration centre - a hub for health data a hub for health data from patient care and from patient care and medical research medical research,” In: Gesundhyte.de, iss. 13 July 2021, pp. 84-87, 2021

 

AK. Kock-Schoppenhauer, B. Schreiweis, H. Ulrich, N. Reimer, J. Wiedekopf, B. Kinast, H. Busch, B. Bergh and J. Ingenerf
Medical Data Engineering – Theory and Practice. In: L. Bellatreche, G. Chernishev, A. Corral.,  S. Ouchani, J. Vain (eds) Advances in Model and Data Engineering in the Digitalization Era. MEDI 2021.
Communications in Computer and Information Science, vol 1481. Springer, Cham., 2021

 

M. Anywar, S. Pazmino, K. Y. Cheng, N. Petersen, H. Qian, F. Rottmann, T. Richter, T. Bronsch, B. Bergh and B. Schreiweis
Mapping HL7v2 ORU and BAR Messages to openEHR Archetypes
66. Jahrestagung der Deutschen Gesellschaft für Medizinische Informatik, Biometrie und Epidemiologie e. V. (GMDS), 12. Jahreskongress der Technologie- und Methodenplattform für die vernetzte medizinische Forschung e. V. (TMF), 2021

 

B. Kinast, M. Lutz and B. Schreiweis
Telemonitoring of Real-World Health Data in Cardiology: A Systematic Review.
Int. J. Environ. Res. Public Health, 18, 9070, 2021

 

E. Rinaldi, J. Saas and S. Thun
Use of LOINC and SNOMED CT with FHIR for Microbiology Data
Stud Health Technol Inform. 278: 156-162, 2021

 

T. Baumgartl, M. Petzold, M. Wunderlich, M. Hohn, D. Archambault, M. Lieser, et al.
In Search of Patient Zero: Visual Analytics of Pathogen Transmission Pathways in Hospitals
IEEE Transactions on Visualization and Computer Graphics (TVCG), 27 (2): 711-21, 2021

 

E. Rinaldi and S. Thun
From OpenEHR to FHIR and OMOP Data Model for Microbiology Findings
Stud Health Technol Inform. 281: 402-406, 2021

2020

Mascia, F. Frexia, P. Uva, G. Zanetti, L. Pireddu, G. Giacomelli, C. Jaeger-Schmidt, A. Tomczak, S. Schumacher, F. Kaercher, R. Eils, S. Ljosland Bakke, H. Leslie
The openEHR Genomics Project
Stud Health Technol Inform. 2020 Jun 16;270:443-447.

 

E. Tute, M. Gietzelt
Using structured ETL-information for validating data integration
65th Annual Meeting of the German Association for Medical Informatics, Biometry and Epidemiology (GMDS), Meeting of the Central European Network (CEN: German Region, Austro-Swiss Region and Polish Region) of the International Biometric Society (IBS). GMDS & CEN-IBS 2020; 2020 September 6; Berlin, Germany. c2020

 

A.-M. Rajput

Semi-Automated Method to Generate Simulated Clinical Data from OpenEHR Platform - Think!EHR

Stud Health Technol Inform. 275:232-233, 2020

 

A.-M. Rajput, S. Ballout and C. Drenkhahn

Standardizing the Unit of Measurements in LOINC-Coded Laboratory Tests Can Significantly Improve Semantic Interoperability

Stud Health Technol Inform. 275:234-235, 2020

 

R. Bild, M. Bialke, K. Buckow, T. Ganslandt, K. Ihrig, R. Jahns, A. Merzweiler, S. Roschka, B. Schreiweis, S. Staubert, S. Zenker and F. Prasser
Towards a comprehensive and interoperable representation of consent-based data usage permissions in the German medical informatics initiative
BMC Med Inform Decis Mak, vol. 20, iss. 1, p. 103, 2020

 

M. Müller, M. Petzold, M. Wunderlich, T. Baumgartl, M. Höhn, V. Eichel, ... and T. von Landesberger
Visual analysis for hospital infection control using a RNN model
EuroVis Work. Vis. Ana. (EuroVA). The Eurographics Association, 2020

 

A. Wulff, S. Ballout, M. Gietzelt, M. Marschollek, S. Scheithauer, and the HiGHmed infection control study group
A Report on Data Modelling for Infection Control in HiGHmed
Conference on Digital ID2020 Digitalization and Infectious Diseases, 2020

 

B. Zacher, S. Haller, R. Kramer and T. Eckmanns
A machine learning framework for outbreak detection in infectious disease surveillance systems [poster]
Conference on Digital ID2020 Digitalization and Infectious Diseases, 2020

2019

E. Tute, M. Marschollek
Technical architecture of a tool for interoperable data characterization.
Deutsche Gesellschaft für Medizinische Informatik, Biometrie und Epidemiologie. 64. Jahrestagung der Deutschen Gesellschaft für Medizinische Informatik, Biometrie und Epidemiologie e.V. (GMDS); 2019 September 8; Dortmund, Germany. Düsseldorf: German Medical Science GMS Publishing House; c2019.

 

B. Schreiweis, D. Ammon, M. Sedlmayr, F. Albashiti, and T. Wendt
Das Datenintegrationszentrum – Ausgangspunkt für die datengetriebene medizinische Forschung und Versorgung
mdi, vol. 4 Dezember 2019, iss. Jahrgang 21, pp. 106-110, 2019

 

Bild, T. Ganslandt, K. Ihrig, R. Jahns, A. Merzweiler, B. Schreiweis, S. Stäubert, S. Zenker, M. Bialke, and F. Prasser
Standards #10 – Medizininformatik-Initiative
E-HEALTH-COM, vol. 2_3/19, pp. 50-53, 2019

 

Bronsch, R. Böhm, C. Bulin, B. Bergh, and B. Schreiweis
Mapping Medication Metadata from the ABDA Data Model to an OpenEHR Medication Archetype: A Qualitative Analysis
Studies in health technology and informatics, vol. 264, 1435–1436, 2019

 

A. Sargeant, T. von Landesberger, C. Baier, F. Bange, A. Dalpke, T. Eckmanns, et al.
Early Detection of Infection Chains & Outbreaks: Use Case Infection Control
ICT for Health Science Research, Stud Health Technol Inform, 258: 245-6, 2019

 

T. von Landesberger, M. Wunderlich, T. Baumgartl, M. Höhn, M. Marschollek and S. Scheithauer
Visual-Interactive Exploration of Pathogen Outbreaks in Hospitals
EuroVis (Posters): 9-11, 2019

 

A. Wulff, KK. Sommer, S. Ballout, HiGHmed Consortium, B. Haarbrandt and M. Gietzelt
A Report on Archetype Modelling in a Nationwide Data Infrastructure Project
Studies in Health Technology and Informatics, 258: 146-150, 2019

 

B. Zacher and I. Czogiel

Supervised learning improves disease outbreak detection
Robert Koch Institute, Department of Infectious Diseases, 2019

 

M. Wunderlich, I. Block, T. von Landesberger, M. Petzold, M. Marschollek and S. Scheithauer
Visual Analysis of Probabilistic Infection Contagion in Hospitals
Vision, Modeling, and Visualization, 143-150, 2019

 

K. Beier, M. Schweda, S. Schicktanz 
Taking patient involvement seriously:
a critical ethical analysis of participatory approaches in data-intensive medical research.

BMC Medical Informatics and Decision Making, 19, 90, 2019

2018

A. Wulff, B. Haarbrandt and M. Marschollek
Clinical Knowledge Governance Framework for Nationwide Data Infrastructure Projects
Studies in Health Technology and Informatics, 248: 196-203, 2018

 

B. Haarbrandt et al. 
HiGHmed – An Open Platform Approach to Enhance Care and Research across Institutional Boundaries 
Methods of Information in Medicine, 57, e66–e81, 2018

 

B. Schreiweis, T. Bronsch, A. Merzweiler and B. Bergh
Implementing Modular Research Consents Using IHE Advanced Patient Privacy Consents
Studies in Health Technology and Informatics, 840–844, 2018

 

P. Knaup, T. Deserno, H.-U. Prokosch, and U. Sax
Implementation of a National Framework to Promote Health Data Sharing:
The German Medical Informatics Initiative

Yearbook of Medical Informatics, 27, 1, 302–304, 2018

 

M. Parciak et al.
PROV@TOS, a Java Wrapper to capture provenance for Talend Open Studio jobs
presented at the 63. Jahrestagung der Deutschen Gesellschaft für Medizinische Informatik, Biometrie und Epidemiologie e. V. (GMDS), 2018

 

S. Semler, F. Wissing, and R. Heyder
German Medical Informatics Initiative: A National Approach to Integrating Health Data from Patient Care and Medical Research
Methods of Information in Medicine, 57, 1, e50–e56, 2018

 

S. Gehring and R. Eulenfeld
German Medical Informatics Initiative: Unlocking Data for Research and Health Care
Methods of Information in Medicine, 57, 1, e46–e49, 2018

BMBF
MII